SubtiBank SubtiBank
yhdI [2018-02-12T02:57:35.000Z]
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yhdI [2018-02-12T02:57:35.000Z]

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU09480
pI
6.80
mw
52.60 kDa
protein length
469 aa Sequence Blast
gene length
1407 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    1,026,255 → 1,027,664

    The protein

    Protein family

  • [SW|MocR/ GabR family ][Pubmed|22020104]

    • Paralogous protein(s)

  • [protein|05A23F4611674B0092262DEC309F7AD6B9B5BE30|YdeL], [protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], there are 5 additional members of the [SW|MocR/ GabR family ]in B. subtilis

    • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

    • Structure

  • [PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], 40% identity) [pubmed|24127574]

    • Expression and Regulation

    Operons

    genes
    [gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B480 (yhdI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1479 NBRP B. subtilis, Japan]
  • BKE09480 (Δ[gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
  • BKK09480 (Δ[gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG

    • References

  • 11756427,22020104,24127574